Thursday, March 24, 2016

Primary producer dynamics and deep convective overturn in the Mediterranean Sea: a 3D high resolution modeling approach

By Fayçal Kessouri
My work focuses on modeling plankton ecosystems using a physical-biogeochemical coupled model. This kind of modeling is a 3D virtual representation of the main constituents of the lowest trophic level of a marine ecosystem. It includes plankton, bacteria, and the nutrients that support them under realistic hydrological conditions and atmospheric forcing.
The biogeochemical model I use shows the impact of current dynamics on the nutrients that support the marine plankton including nitrate, phosphate, and silicate. How are they distributed in the ocean? How are they consumed? Who consumes them?
The biogeochemical model shows only a part of the complex feedbacks between different components of the ecosystem. Some examples are as follows and are shown in figure 1 below: inorganic matter feeds the phytoplankton when certain abiotic conditions are available (enough light, stratified ocean layer), phytoplankton feed zooplankton, both of them produce organic matter. Organic matter is mineralized to inorganic matter, which then feed bacteria, which release dissolved inorganic and organic matter, and the cycle continues.

Figure 1: These biogeochemical feedbacks between compartments take place in the ocean. (POM= particulate organic matter, DOM= dissolved organic matter, DIM: dissolved inorganic matter or nutrients).
Marine plankton are the foundation of all marine life. They influence fisheries, the world economy, and world health, and they have an important role of maintaining biodiversity. Plankton are composed of:
1- The phytoplankton: which contain the largest mass of marine plants in the world. Some estimates show that marine vegetation produces more than half of the oxygen we breathe on Earth.
2- The zooplankton: which feed on phytoplankton (see also Catarina’s post). They represent the largest diurnal animal migration in the world.
3- The bacterioplankton and virioplankton: making up the largest biomass on the planet, prokaryotes and viruses are often a forgotten aspect of classic marine food webs.
The Mediterranean Sea lies between three continents (Europe, Africa and Asia) and therefore undergoes physical pressures from river discharge and atmospheric deposits of inorganic and organic matter, which has two levels of impacts: (1) overall balance of organic and inorganic matter in the whole sea, (2) eutrophication of coastal waters.
One of our most important findings using this modeling is the quantification of all imports and exports of matter during the last ten years between the Mediterranean and the surrounding environments (continents and Atlantic Ocean). We have estimated that the Mediterranean enriches the Atlantic by more than 140 X 109 moles of nitrogen every year through the Strait of Gibraltar.
The Mediterranean Sea has a common feature with the North Atlantic Ocean and the Antarctic Ocean: deep convection zones. In the Mediterranean, intense mixing is observed almost every winter for two months. Imagine a drop of water moving from the bottom of the Mediterranean at a depth of 2300 m and rising to the surface in a single day. This convective overturn from the gradients created by exchanges in surface heat and freshwater fluxes is the engine of global oceanic thermohaline circulation. This density-gradient driven circulation is estimated to be on the timescale of 70 years in the Mediterranean and 1000 years in the world ocean.
The deep-water masses contain high concentrations of nutrients, which are propagated to the surface during the deep mixing events. When the mixing stops at the end of winter, some of these nutrients are trapped in the surface waters, and a huge plankton bloom occurs over an area of 5 000 to 20 000 km2 (figure 2). Phytoplankton blooms can be so large, many can be observed and estimated from space by Satellites, and are thus well modeled. The phytoplankton bloom takes directly above the site of deep convection, which is referred to as the northern gyre of the NW Mediterranean Sea. They gyre is surrounded by strong cyclonic currents (counterclockwise in the Northern hemisphere).

Figure 2: Modeled phytoplankton concentration (chlorophyll-a [mg/m3]) in the NW Mediterranean Sea. a- Winter condition, the center of the basin is phytoplankton deplete because of winter vertical mixing. b Spring phytoplankton bloom (Kessouri et al., in prep).

Fayçal Kessouri
F:\IMAGES\autres photo\WP_20140223_012.jpg
I am currently a postdoc in the Ocean and Atmospheric department at the University of California in Los Angeles, CA, USA, and my Ph.D. was developed at Toulouse University in France (Laboratoire d’Aerologie). My field of work is oceanic biogeochemistry and 3D modeling of plankton ecosystems, especially oceanic physical forcing. I worked on the deep convection of the Mediterranean Sea impact on the plankton ecosystem, and currently I am working on the upwelling of the California Current System and its impact on acidification and hypoxia of the western US coast. My desire to get training in numerical modeling motivated me to work with a team of physicists to acquire a more integrated vision of ecosystem functioning and impacts. It has helped me to study dynamic processes such as the deep convection that has always fascinated me. I am convinced that modeling is the perfect tool to complement the networks of observations currently being made, especially if one wants to study different time and space scales.

  

Friday, February 26, 2016

Fishers’ stories

By Ana Helena Bevilacqua


Everything started in 2007, when a São Paulo girl left her hometown to live on the Amazon. The main objectives were to get a master’s degree, study freshwater fish physiology, get to know the forest, learn how to fish, and to spread her wings. She achieved all of these things, fishing abilities left to be desired…

The master’s project fieldwork required long periods of time spent in the Amazon’s countryside, collecting fish, doing experiments, meeting people, learning the local customs, and living intensely with the forest and its traditions. And in the middle of this ocean of new experiences, a passion for the anecdotes told by fishers arose!

At the time, the stories were not the goal of the study, but they quickly became a personal goal. Long, late afternoons were spent together with fishermen and their families, with many kids, dogs and, for sure, a good cup of sweet, fresh coffee, a local tradition not to be missed!

From these relaxed chats, was born ideas for a future PhD. Until this point, the PhD was merely a faint idea since the master’s degree needed to be finished first. As time passed, the fieldwork was finished, the master’s degree was defended, and the will to continue the talks was only increasing. But what was next?


But there, a PhD topic had already been mapped out: human ecology of small-scale fishers!


And so, the migration to the marine sciences happened as naturally as those long conversations on the riverbank. Giving way to more targeted conversations, accompanied with only clipboard, paper, pencil, and a huge salt-water ocean ahead.


The perfect life: go to the beach to spend all day talking with fishers! This is all that I wanted! But, there was more to this, I had an ultimate goal, so the conversations were not uncommitted and light. There were questions to be answered, a methodology to be followed, and something to be done. After all, it was PhD fieldwork!




The goal of my PhD was to understand a little more about the small-scale fishers from the northeast coast of Brazil, and communicate traditional fishers’ knowledge to the scientific community. Basically what I wanted to do was to combine the fishers’ stories with traditional knowledge of marine sciences, and show that this knowledge can fill the gaps in scientific information in areas with limited data available. This information from local fishers could be used in sculpting local management plans and public policies. However, this first required me to prove that there is knowledge and truthful information behind the fishers’ anecdotes. 










I needed to compare the information provided in the fishers’ stories with the information from scientific literature, which I did using a marine ecosystem virtual model. This virtual model tries to represent all ecological relationships that exist in the real ecosystem, such as growth, reproduction, and predation. For this, I built two models: one based on scientific information and another one based on my conversations, and then compared the two!


For this ecosystem model I used free software called Ecopath with Ecosim, which is a computational program where we can insert all the information of a real environment and to create a virtual one. This software was created by Villy Christensen and Daniel Pauly in 1992, at the Institute for the Ocean and Fisheries (ex-Fisheries Centre), in the University of British Columbia, in Canada, and is constantly being enhanced. The program I use is based on energy balance equations that define the natural dynamics present in the marine environment and the ecological interactions that occur there. In other words, all energy available is cycled between all species, and is responsible for organismal growth and reproduction. For this, we use information about how much food predators require and compare this to production rates of the prey. The program is able to create an “ecological snapshot” about what is happening in that environmental (if you want know more about this software, go to ecopath.org).

For the construction of a virtual marine ecosystem (or freshwater, if you prefer), we must define the area, insert all species or groups of species, include information about the diet of each organism, determine the predators, how much food each one needs per day and growth rates. Of course we also must include the fisheries, by vessel type and gear.

After this, the software can use the biological interactions to create a trophic web of who eats whom, just like the diagram below. The advantage of this model is that in addition to creating an easy visualization ecosystem, we can change fishing pressure on target species, and also include the by-catch (common expression in fisheries science to define the species that was caught unintentionally).

This food web was created using Ecopath with Ecosim software, using only the fishers’ information. The color indicates the trophic level: in red are the producers at the bottom of the ecosystem (seaweeds, phytoplankton, and detritus), and blue is the highest trophic level, represented by predators (shark, dolphin and large pelagic). The circle size represent the biomass (amount of individuals or weight of each group) and the lines represent the links between each group.


The best thing about this model is that we are able to “predict” how the entire ecosystem would react to an increase (or decrease) in fishing pressure, restriction of certain gear, creation of non-take zones, or even a total ban on fishing. With that, we can have a better understanding of future fish stocks, if a number of management and conservation actions are (or not) taken.

And what about the fishers? The results were amazing: the fishers model is almost the same as the scientific model! This means the fishers’ knowledge can be equated with scientific knowledge on some issues, and this can be used to fill the gaps about areas or species with little to no current scientific data. Furthermore, this knowledge is cheaper and more quickly accessible than most scientific research. 

Of course, the fishers don’t know everything. Some questions they were unable to answer. Just like in science, some issues remain a mystery for mankind. 


Thus, combining science with traditional knowledge of natural resources, we can gain a better understanding of ecological relationships and facilitate the implementation of management plans.


All photos by: Laura Honda.


More information in: 

www.ecopath.org

Christensen V (2013) Ecological networks in fisheries: predicting the future? Fisheries 38(2):76–81
Christensen V, Pauly D (1992) ECOPATH II—a software for balancing steady-state ecosystem models and calculating network characteristics. Ecol Model 61:169–185
Coll, M., et al. (2015) Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach. Reviews in Fish Biology and Fisheries 25.2: 413-424.


About Ana Helena Bevilacqua:

Ana was always in love with animals, but it was the fishes that most caught her attention. Since she hated see sick animals, she decided to be a biologist (Mackenzie University, São Paulo), and later went to the Amazon to do a masters’ degree (National Institute for Amazonian Research, Manaus) and ended up going to the beach for her PhD studies. Today, Ana is freezing in Vancouver (Canada), where she is doing an exchange as part of the PhD requisites in Ecology, in the Federal University of Rio Grande do Norte (Natal). In addition to animals, she is interested in healthy eating, canine psychology, hikes, stand-up paddleboard and maracatu.


Friday, December 11, 2015

The hard-knock life of a marine baby fish

Most fish in the world’s oceans reproduce by releasing their reproductive cells (oocytes and sperm) into the marine environment, where the two meet and fertilization occurs. Fish like sardines, groupers, tuna and cobias use this strategy to spawn millions of eggs. About 24 hours after (more or less, depending on species) the end of embryonic development, baby fish are hatched, called larvae.
Eggs and larvae of fish

For a tiny larva to survive in the marine environment, a large amount of quality food is necessary (such as zooplankton, see "For plankton, size matters"). Babies need to be well fed to guarantee fitness and growth until they reach adulthood. In the ocean, there are many animals that feed on small organisms, and eggs and fish larvae have high nutritional value. Fish and other marine animals, such as jellyfish, consume millions of eggs and larvae each season, as just another step in the marine food chain.
Jellyfish Liriope tetraphylla capturing a cobia larva (Rachycentron canadum) 5 mm in size.
It was once believed this little fish lived floating in the seawater for days or even weeks until its eyes, mouth and fins were completely developed. In my doctoral project, I studied the behavior of these small larvae during the first days of life, and I observed that, in addition to floating, they have an amazing swimming ability. Larvae are able to achieve extremely high speeds while swimming to capture food, up to 40 times their body size per second. Note: the world’s fastest man swims only 1.5 times his body size per second!
In general, the swimming of marine organisms is related to feeding, breeding, and the escape from predators. To get food, fish larvae need to coordinate their bodies to move their fins, interpret prey movement, open their mouths, and then capture the prey. To get away from predators, they need to bend their bodies and change swimming direction to successfully escape. These behavioral patterns were recorded for grouper (Epinephelus marginatus) and cobia (Rachycentron canadum) larvae, in my studies. To perform this research we (Laboratory of Plankton Systems team and me, http://laps.io.usp.br/index.php/en/) set up an optical system with a similar configuration to a microscope but in a horizontal position, to study organisms 2-5 millimeters in size in a small aquarium. We filmed with a video camera that captures a high rate of frames per second (also known as "high speed camera"). See more at https://www.facebook.com/lapsiousp
Even with all this skill, survival rate of individuals is only 1% from egg to adulthood. This high mortality rate is due to predation and/or starvation. A small larva faces many challenges, but if successful, one day it will become a mature adult fish and produce a new generation of eggs and larvae, maintaining a natural balance between species and the marine ecosystem.
In the marine environment there are about 16,000 species of fish, many of which we know little about the larval behavior of. An example similar to the research done in my doctoral work is the study conducted on adult fish behavior through, which can be seen in documentaries presented by the National Geographic Channel (http://natgeotv.com/uk/hunters-of-the-deep/galleries/super-fast-fish ). The researchers offered different prey and filmed the swimming and feeding behavior of different species of marine fish. For the curious: access the page and watch the video "Blink of an Eye."
Questions and comments? Contact us or leave a response below!
See you on the next post!
References:
FUIMAN, L. A. Special considerations of fish eggs and larvae. In: Fuiman, L. A.; Werner, R. G. (eds). Fishery Science: The unique contributions of early life stages. Blackwell Science. p. 1- 32, 2002.


GOÇALO, C.G.; AQUINO, N. A. de; KERBER, C. E.; NAGATA, R. M.; LOPES, R. M. Swimming behavior of cobia larvae (Rachycentron canadum) facing prey and predator. 38th Annual Larval Fish Conference, Quebéc, Canadá. 2014


HOUDE, E. D. Emerging from Hjort’s shadow. J. Northwest Atl. Fish. Sci., v. 41, p. 53-70, 2008.


Labels: Cassia G. Goçalo, Marine Science, behavior, fish larvae

Thursday, November 19, 2015

How to tell the age of a fish and other things

By Cláudia Namiki

Have you ever wondered how to tell the age of a fish? If it was born in an aquarium, it is easy to know, but what if it was caught in the wild? 

The teleost fishes have structures located in the inner ear called otoliths, which are used for balance and hearing. In Portugal, these structures are also known as "stones of judgment," which makes sense, since they are in the head of the fish! There are three pairs of otoliths and each has a different name: sagitta, lapillus and asteriscus. Otolith growth occurs through the alternating deposition of calcium carbonate and a protein that forms rings that can be observed in a cross section, much like those observed in the trunks of trees.

 

Otoliths of Myctophum affine larvae. Photo: Claudia Namiki.

In adult fish the otolith is big, thus it is necessary to cut, sand, and polish the otolith until the rings become visible. In larval fish the otoliths are small enough to see through and can simply be glued to a microscope slide. In the case of larval fish, the real work is to remove the otolith from from a fish between 2.0 mm and 2.0 cm length. If the larvae are so small, imagine the size of otoliths!! It is a difficult task that requires much patience. In Brazil we used to say that it requires the discipline and patience of a Japanese elder. I think I used the full 25% of my Japanese DNA while studying the larval growth of an abundant lanternfish species on the Brazilian coast (Myctophum affine). This species does not have a popular name in Brazil, because, although abundant and consumed by other fishes, it is not consumed by humans. In English they are called metallic lanternfish, but only fishermen or ichthyologists know of it.

The illustrious unknown Myctophum affine. Photo: Gabriel Monteiro. 




Look at the size of this fish larvae otolith! It is a great one! 
Photo: Campana, S.E.

So what does this have to do with the topic? How do we know the age of a fish?

In most cases, the formation of the otolith rings is daily in the fish larvae and annual in the adult fishes. Thus, counting the number of rings present in a otolith, we can know the age of the fish in years or days, depending on its life stage. The most interesting thing is that we can relate the age to the length of the fish; with data from various fish, we can know how long it takes a species to reach a certain size. For example, the larvae of the metallic lanternfish can increase their size more than four times in less than a month! Now that is a fast growth rate! Larvae of other popular species such as sardines and mackerel also grow at a similar rate.

Knowing the growth rate of larval and juvenile fish is important because it helps us determine how long each species takes to become a reproductively active adult. This growth rate may be influenced by several factors with temperature as one of the most important. Higher temperatures speed up the fish metabolism, which helps the animal grow more quickly. This means that if we were a fish, we would grow faster in Brazil than in Russia! For example, lantern fish larvae can take between 27 days (tropical species) to 80 days (cold climate species) to become a juvenile.

When I first started to study otoliths, I was only interested in the age and growth rate of fish larvae. However, I discovered that these structures are even more fascinating than I first thought. Because they are quite resilient (in the case of adult fish), the otoliths can be found almost intact in the stomach content of other animals and at archaeological sites. Additionally, otolith shape is unique to each species, so it is possible to identify the species that has been consumed, or that inhabited certain place thousands of years ago. The otolith shape is so important that many works are devoted to describing them, and among them is one otolith identification guide recently published in the Brazilian Journal of Oceanography, by researchers of the Oceanographic Institute of São Paulo University (http://dx.doi.org/10.1590/S1679-875920140637062sp1) (which contains wonderful illustrations by our illustrator and oceanographer Silvia Gonsales).



Otoliths of Cangoá (Stellifer rastrifer) illustrated by Silvia Gonsales. http://dx.doi.org/10.1590/S1679-875920140637062sp1


Stellifer rastrifer otoliths. Photo: Cesar Santificetur. http://dx.doi.org/10.1590/S1679-875920140637062sp1


And the fish these are from, Stelllifer rastrifer. Photo: Carvalho Filho, A.

Moreover, the otoliths carry information from the environment where the fish lived (or should I say swam?). If we know which chemical elements are present in the otoliths, it is possible to know where the fish was throughout its life.
So, while otolith may be just a simple guidance instrument for the fish, for us it gives us access to a  world of information about the life history of these important organisms.


To find out more you may visit:

http://www.usp.br/cossbrasil/doc_labic.php

Campana, S.E. 2011. Otolith Microstructure Preparation. Available at: http://www.marinebiodiversity.ca/otolith/english/preparation.html

Campana, S. E. & Jones, C. M. 1992. Analysis of otolith microstructure data. In Otolith Microstructure Examination and Analysis (Stevenson, D. K. & Campana, S. E., eds), pp. 73–100. Canadian Special Publication of Fisheries and Aquatic Sciences 117.

Conley, W. J. & Gartner, J. V. 2009. Growth among larvae of lanternfishes (Teleostei: Myctophidae) from the Eastern Gulf of Mexico. Bulletin of Marine Science 84, 123–135.

Katsuragawa, M. & Ekau, W. 2003. Distribution, growth and mortality of young rough scad, Trachurus lathami, in the south-eastern Brazilian Bight. Journal of Applied Ichthyology, 19, 21–28.

Namiki, C.; Katsuragawa, M.; Zani-Teixeira, M. L. 2015. Growth and mortality of larval Myctophum affine (Myctophidae, Teleostei). Journal of Fish Biology, 86, 1335-1347. doi:10.1111/jfb.12643, Available at: wileyonlinelibrary.com

Rossi-Wongtschowski, C.L.D.B., Siliprandi, C.C., Brenha, M.R.,Gonsales, S.A., Santificetur, C., Vaz-dos-Santos, A.M. 2014.Atlas of marine bony fish otoliths (sagittae) of Southeastern- Southern Brazil Part I: Gadiformes Macrouridae, Moridae, Bregmacerotidae, Phycidae And Merlucciidae); Part II: Perciformes (Carangidae, Sciaenidae, Scombridae And Serranidae). Brazilian Journal of Oceanography, 62(special issue):1-103. Available at:
http://dx.doi.org/10.1590/S1679-875920140637062sp1

Zavalla-Camin, L. A., Grassi, R. T. B., Von Seckendorff, R.W. & Tiago, G. G.1991. Ocorrência de recursos epipelágicos na posição 22°11’S - 039°55’W, Brasil. Boletim do Instituto de Pesca 18, 13–21.









Friday, October 16, 2015

The ship’s balance...



Have you ever asked how ships are balanced at sea? Or how it can carry people and merchandise without tipping over? It is easy to imagine that there is an ideal maximum weight, designed and calculated by engineers, that the ship can support without sinking. OK. But how does how can this keep its balance when it is empty?

Credit: http://ultradownloads.com.br/papel-de-parede/Navio-Tombado/
The answer is easy: it needs to add weight when it is empty and then release the weight while loading it with people or merchandise.

In the beginning, there were several attempts with stones and pieces of wood, but due to the effort required to add and remove these materials, a better thought was to use the seawater! Pumps could be used to pull in and throw out the water when ship was docked. This method is the method we still use today; ships have a ballast tank, which can hold ballast water that is pumped in and released.
Credit: The environmental risk of ballast water – ONG Água de lastro Brasil. (http://stateofthecoast.noaa.gov/invasives/ballastwater_large.jpg)
That is where my story begins!

Imagine an empty ship going from China to Brazil, where it will be loaded with merchandise. As already explained, the ship would have to pump water from the Chinese coast to keep balance while traveling.

The water pumped in however, is not pure and has a lot of organisms that who are trapped inside the ballast tank. You might be asking: isn’t there a mesh filter that can be used to avoid trapping these organisms? Yes, but it’s not efficient, especially for microorganisms.

A second problem is, according to International Maritime Organization (IMO), ships are to exchange water in the open sea, because there are different physical and biological conditions in port that the organisms from the open ocean cannot survive. However, this does not happen. Aside from many ships not changing water at sea, there are several organisms that can resist both the travel and different environmental conditions.

When arriving at the destination port, these non-native organisms are discharged along with the ballast water, causing serious problems for the local fauna and flora, as well as public health. Can you imagine the environmental impact?

Because of this, there are many countries that belong to IMO doing research to solve this problem. One of these solutions is the treatment of the ballast water inside of the tank. There are many treatment proposals: mechanic, physical, and chemical. These are currently either in testing, generate waste, or are not completely efficient.

I did work with phytoplankton, marine microalgae explained here. These microscopic organisms can be resistant to many treatments, and some species are toxic to animals. In fact, red tide is caused by a microalgae group.

My challenge was then, to find ways to eradicate these microscopic algae from the ship ballast water. I tested three treatments: exposure to UV, ozone, and Peraclean, a chemical with characteristics similar to hydrogen peroxide. As I developed this project, I knew that these treatments were of huge importance and needed further studies done.

The most interesting stage of this project was the partnership with the company Brasil Ozonio (a company that works with the University of São Paulo). Don’t be afraid to make university-industry partnerships; much of our knowledge doesn’t go forward because the researchers don’t want to expose their work and ideas. This partnership was essential to my work.
Credit: Izadora Mattiello.
After conducting a series of experiments, my best result was with the ozone! I was able to eradicate even the most resistant microalgae (the dinoflagellates), which no other treatment had managed to kill. In addition to being effective, this treatment doesn’t generate waste into the treated water, so it may be safely discharged overboard.

In future posts, I will discuss my results in more detail, but if you want to know a little more about it, follow the links about my dissertation:

See you!

Friday, September 18, 2015

For plankton, size matters


Today, I want to discuss a subject that has fascinated me since I started my PhD. We are often asked “What is you PhD about?” and the general reaction of grad students is simply to avoid the subject or to just reproduce the title (some long and complicated name that nearly nobody, let alone ourselves sometimes, is able to understand). Or we simply say that it is too hard to explain with simple words. Notice how this sounds like we think too much of ourselves: we are very smart and outsiders will never be able to understand what took us so long to embrace.

Well, that is exactly the kind of attitude that the grad student should avoid. This blog is designed to be a place where academia may connect with society. I had a beloved professor that used to say that every grad student should be able to explain his/her project to his/her grandmother, and only once we accomplish that, would we finally be confortable with the theory behind our research. So, I’ll try to do exactly that, a little late I confess since I have already finished my PhD. I’ll explain in a simple – but not simplistic – way the work I developed during my PhD.

I am interested in plankton, more specifically, the zooplankton! No, I’m not referring to SpongeBob’s villain, but they are nonetheless, interesting creatures worth knowing a bit more about. Zooplankton are tiny aquatic critters, usually invisible to the naked eye. They are traditionally described as organisms that travel with the currents because they don’t have enough “strength” to swim against it, due to their small size. But that does not mean they are lazy guys. On the contrary, many of them are able to vertically migrate large distances through the water column, sometimes hundreds of meters, on a daily basis.

Watch video in: http://laps.io.usp.br/index.php/en/projects/81-english/laps/projects/97-samba

Example of food chain.
Source: http://lifeadrift.info/
Zooplankton are very important in marine food webs, and they are also fundamental to other important processes in the oceans (we can discuss that in another post). These organisms feed on phytoplankton (the photosynthetic plankton that are to the oceans, what the trees are to the Amazon Forest) and are eaten by fish, which are ultimately eaten by larger fish, marine mammals including whales, and even us humans. So you can imagine that if there are few plankton in the area, there will also be less fish and other organisms in higher trophic levels. This includes a limited supply of fish for us, which means less sushi, and I love Japanese food!

If zooplankton are so important in mediating the transfer of biomass and energy from primary producers (phytoplankton) to higher trophic levels (fish, birds, whales, man) then we must understand these feeding relationships very deeply, don’t you agree? Well, one of the golden rules in the ocean is that organisms always (or almost always) feed on organisms that are smaller than themselves. That is why size matters when zooplankton choose the dinner menu. Many researchers have studied the flow of biomass and energy through the trophic levels. For example, it has been calculated how much of a “dinner” is actually absorbed by a zooplankton and how much is left to the fish, birds and whales that feed on the same guy. This information can potentially explain a lot of things about the oceans.

But how? Well, if you measure the size of organisms, calculate their weights, and plot this information in a graph, such as the one in this page, you will notice that there is always more biomass accumulated in the small organisms than in the bigger ones. By accumulated biomass I mean the biomass of all organisms in that particular size range. What does that mean? It means that to satisfy the hunger of one big guy, it is necessary to have a whole bunch of small guys. You must remember there is energy loss in every “meal” because total nutrition is never absorbed with everything that we, or any other organisms, eat.

Based on these facts, the biomass size spectra theory was developed. This theory relates the shape of the biomass distribution through size classes (and also the mathematical indices associated with it) with properties of the ecosystems. Personally, I think it is absolutely amazing how a simple mathematical index can be used to determine the energy transfer efficiency in an ecosystem, taking into account productivity, predator-prey interactions, and the number of trophic links in the oceans.

My PhD was based on this theory with a scary name (spectra tends to conjure images of ghosts, no?), but the theory is not as complex as it seems. To get my data, I collected zooplankton samples with a simple net (as seen in the photo) aboard several cruises. When back in the lab, all I had to do was to scan my samples with a waterproof scanner (the ZooScan), and very useful software automatically classified, counted, and measured the size of each organism. I also learned how to program in R and Matlab to analyze the enormous amount of data for me, because life is short and I have other hobbies in addition to science to dedicate myself to, such as this blog!

The results I found for the coast of Ubatuba, Sao Paulo and Abrolhos Bank revealed that the mathematical indices associated with the biomass size spectra theory can be used to detect differences in the zooplankton community caused by seasons and local features (water column stratification, depth, proximity of the coast). That means these indices are useful for monitoring oceanic ecosystems because they are easily calculated – granted you have technology to help – and there is no need to identify species, which is usually a time-consuming task when we are talking about plankton.

If you are interested in the subject, my PhD dissertation is available at this link: